IUPAC nomenclature of organic chemistry IUPAC nomenclature of organic chemistry Freundeskreis Category="Chemical nomenclature"Category="Encodings"Category="Organic chemistry"The IUPAC nomenclature of organic chemistry is a systematic way of naming Organic chemical compounds as recommended by the International Union of Pure and Applied Chemistry (IUPAC). Ideally, every Organic compound should have a name from which an unambiguous Structural formula can be drawn. There is also a IUPAC nomenclature of inorganic chemistry.

In IUPAC nomenclature, a number of prefixes, suffixes and infixes are used to describe the type and position of functional groups in the compound.

Alkanes

Straight-chain alkanes take the suffix "-ane" and are prefixed depending on the number of carbon atoms in the chain, as given by the following table:

Number of carbons123456789101112
PrefixMethEthPropButPentHexHeptOctNonDecUndecDodec

For example, the simplest alkane is CH4 methane, and the nine-carbon alkane CH3(CH2)7CH3 is named nonane.

Cyclic alkanes are simply prefixed with "cyclo-", for example C4H8 is cyclobutane and C6H12 is cyclohexane.

[image][image]
Branched alkanes are named as a straight-chain alkane with attached Alkyl groups. They are prefixed with a number indicating the carbon the group is attached to, counting from the end of the alkane chain. Infixed is the name of the substituent, as for alkanes in the table above, plus "-yl". For example, (CH3)2CHCH3, commonly known as isobutane, is treated as a propane chain with a methyl group bonded to the middle (2) carbon, and given the systematic name 2-methylpropane. Numbers may be dropped when there is no ambiguity, so 2-methylpropane is just methylpropane. (1-methylpropane would be identical to butane.)

If there is ambiguity in the position of the substituent, depending on which end of the alkane chain is counted as "1", then numbering is chosen so that the smallest number is used. For example, (CH3)2CHCH2CH3 (isopentane) is named 2-methylbutane, not 3-methylbutane. Since this resolves the ambiguity, the number is again dropped in this case.

[image] If there are multiple side-branches of the same size alkyl group, their positions are separated by commas and the group prefixed with di-, tri-, tetra-, etc., depending on the number of branches (e.g. C(CH3)4 2,2-dimethylpropane). If there are different groups, they are added in alphabetical order, separated by commas or hyphens: 3-ethyl-4-methylhexane. The longest possible main alkane chain is used; therefore 3-ethyl-4-methylhexane instead of 2,3-diethylpentane, even though these describe equivalent structures. The di-, tri- etc. prefixes are ignored for the purpose of alphabetical ordering of side chains (e.g. 3-ethyl-2,4-dimethylpentane, not 2,4-dimethyl-3-ethylpentane). If multiple chains of the longest possible length exist, the chain that has a larger number of branch points is the chain that is used.

[image]

Subsidiary branches off a side-chain are prefixed according to a secondary numbering system specific to that side branch, numbering from the point of attachment to the main chain, and then the whole side-branch is parenthesised and treated as a single substituent. For example, 4-(1-methylethyl)octane is a octane chain with a side chain bonded to the 4th carbon, the side chain consisting of an ethyl group with a methyl group attached to the carbon closest to the main chain.

Alkenes and Alkynes

[image] Alkenes are named for their parent alkane chain with the suffix "-ene" and an infixed number indicating the position of the double-bonded carbon in the chain: CH2=CHCH2CH3 is but-1-ene. Ethene (Ethylene) and propene (Propylene) do not require infixed numbers, since there is no ambiguity in the structures. As before, the lowest number is used.

Multiple double bonds take the form -diene, -triene, etc., with the size prefix of the chain taking an extra "a": CH2=CHCH=CH2 is buta-1,3-diene. Simple CIS and Trans isomers are indicated with a prefixed cis- or trans-: cis-but-2-ene, trans-but-2-ene. More complex geometric isomerisations are described using the Cahn Ingold Prelog priority rules.

[image] Alkynes are named using the same system, with the suffix "-yne" indicating a triple bond: ethyne (Acetylene), propyne (Methylacetylene).

Alcohols

[image] Alcohols (R-OH) drop the terminal "e" from the name of the parent alkane, and take the suffix "-ol" with an infix numerical bonding position: CH3CH2CH2OH is propan-1-ol. (Methanol and Ethanol are unambiguous and do not require position numbers). The suffixes -diol, -triol, -tetraol, etc., are used for multiple -OH groups: Ethylene glycol CH2OHCH2OH is ethane-1,2-diol.

[image] If higher precedence functional groups are present (see order of precedence, below), the prefix "hydroxy" is used with the bonding position: CH3CHOHCOOH is 2-hydroxypropanoic acid.

Halogenated compounds

[image] Halogen functional groups are prefixed with the bonding position and take the form fluoro-, chloro-, bromo-, iodo-, etc., depending on the halogen. Multiple groups are dichloro-, trichloro-, etc, and disimilar groups are orded alphabetically as before. For example, CHCl3 (Chloroform) is trichloromethane. The anesthetic Halothane (CF3CHBrCl) is 2-bromo-2-chloro-1,1,1-trifluoroethane.

Ketones

[image] In general ketones (R-CO-R) take the suffix "-one" (pronounced own, not won) with an infix position number: CH3CH2CH2COCH3 is pentan-2-one. For common ketones some traditional names such as Acetone and Benzophenone predominate, and these are acceptable IUPAC names, although some introductory chemistry texts use alternative names for acetone such as propan-2-one or propanone (see diagram). If a higher precedence suffix is in use, the prefix "oxo-" is used: CH3CH2CH2COCH2CHO is 3-oxohexanal.

Aldehydes

[image] Aldehydes (R-CHO) take the suffix "-al". Since they are always at the end of a alkane chain, they do not need a position number: HCHO (Formaldehyde) is methanal, CH3CHO (Acetaldehyde) is ethanal. If other functional groups are present, the chain is numbered such that the aldehyde carbon is in the "1" position.

If a prefix form is required, "oxo-" is used (as for ketones), with the position number indicating the end of a chain: CHOCH3COOH is 3-oxopropanoic acid. If the carbon in the carbonyl group cannot be included in the attached chain (for instance in the case of cyclic aldehydes), the prefix "formyl-" or the suffix "-carbaldehyde" is used: C6H11CHO is cyclohexanecarbaldehyde.

Carboxylic acids

[image] In general carboxylic acids are named with the suffix "-anoic acid". As for aldehydes, they take the "1" position on the parent chain, but do not have their position number indicated. For example, CH3CH2CH2CH2COOH (valeric acid) is named pentanoic acid. For common carboxylic acids some traditional names such as Acetic acid are in such widespread use they are considered retained IUPAC names, although "systematic" names such as ethanoic acid are also acceptable. For carboxylic acids attached to a benzene ring such as Ph-COOH, these are named as benzoic acid or its derivatives.

If there are multiple carboxyl groups on the same parent chain, the suffix "-carboxylic acid" can be used (as -dicarboxylic acid, -tricarboxylic acid, etc.). In these cases, the carbon in the carboxyl group does not count as being part of the main alkane chain. The same is true for the prefix form, "carboxyl-". Citric acid is one example; it is named 2-hydroxy-1,2,3-propanetricarboxylic acid, rather than 2-carboxy, 2-hydroxypentanedioic acid.

Ethers

[image] Ethers (R-O-R) consist of an oxygen atom between the two attached carbon chains. The shorter of the two chains becomes the first part of the name with the -ane suffix changed to -oxy, and the longer alkane chain become the suffix of the name of the ether. Thus CH3OCH3 is methoxymethane, and CH3OCH2CH3 is methoxyethane (not ethoxymethane). If the oxygen is not attached to the end of the main alkane chain, then the whole shorter alkyl-plus-ether group is treated as a side-chain and prefixed with its bonding position on the main chain. Thus CH3OCH(CH3)2 is 2-methoxypropane.

Esters

[image] Esters (R-CO-O-R') are named as alkyl derivatives of carboxylic acids. The alkyl (R') group is named first. The R-CO-O part is then named as a separate word based on the carboxylic acid name, with the ending changed from oic acid to oate. For example, CH3CH2CH2CH2COOCH3 is methyl pentanoate, and (CH3)2CHCH2CH2COOCH2CH3 is ethyl 4-methylpentanoate. For esters such as Ethyl acetate (CH3COOCH2CH3), Ethyl formate (HCOOCH2CH3) or dimethyl phthalate that are based on common acids, IUPAC recommends use of these established names, called retained names. Some simple examples, named both ways, are shown in the figure above.

[image] If the alkyl group is not attached at the end of the chain, the bond position to the ester group is infixed before "-yl": CH3CH2CH(CH3)OOCCH2CH3 may be called but-2-yl propanoate or but-2-yl propionate.

Amines and Amides

[image] Amines (R-NH2) are named for the attached alkane chain with the suffix "-amine" (e.g. CH3NH2 methanamine). If necessary, the bonding position is infixed: CH3CH2CH2NH2 propan-1-amine, CH3CHNH2CH3 propan-2-amine. The prefix form is "amino-".

For secondary amines (of the form R-NH-R), the longest carbon chain attached to the nitrogen atom becomes the primary name of the amine; the other chain is prefixed as an alkyl group with location prefix given as an italic N: CH3NHCH2CH3 is N-methylethanamine. Tertiary amines (R-NR-R) are treated similarly: CH3CH22N(CH3)CH2CH2CH3 is N-methyl-N-ethylpropanamine.

[image] Amides (R-CO-NH2) take the suffix "-amide". There is no prefix form, and no location number is required since they always terminate a carbon chain, e.g. CH3CONH2 (Acetamide) is named ethanamide.

Secondary and tertiary amides are treated similarly to the case of amines: alkane chains bonded to the nitrogen atom are treated as substituents with the location prefix N: HCON(CH3)2 is N,N-dimethylmethanamide.

Cyclic compounds

[image] Cycloalkanes and aromatic compounds can be treated as the main parent chain of the compound, in which case the position of substituents are numbered around the ring structure. For example, the three isomers of Xylene CH3C6H4CH3, commonly the ortho-, meta-, and para- forms, are 1,2-dimethylbenzene, 1,3-dimethylbenzene, and 1,4-dimethylbenzene. The cyclic structures can also be treated as functional groups themselves, in which case they take the prefix "cycloalkyl-" (e.g. "cyclohexyl-") or for benzene, "phenyl-".

The IUPAC nomenclature scheme becomes rapidly more elaborate for more complex cyclic structures, with notation for compounds containing conjoined rings, and many common names such as Phenol, Furan, Indole, etc. being accepted as base names for compounds derived from them.

Order of precedence of groups

When compounds contain more than one functional group, the order of precedence determines which groups are named with prefix or suffix forms. The highest precedence group takes the suffix, with all others taking the prefix form. However, double and triple bonds only take suffix form (-en and -yn) and are used with other suffixes.

Prefixed substituents are ordered alphabetically (excluding any modifiers such as di-, tri-, etc.), e.g. chlorofluoromethane, not fluorochloromethane. If there are multiple functional groups of the same type, either prefixed or suffixed, the position numbers are ordered numerically (thus ethane-1,2-diol, not ethane-2,1-diol.) The N position indicator for amines and amides comes before "1", e.g. CH3CH(CH3)CH2NH(CH3) is N,2-dimethylpropanamine.

PriorityFunctional groupFormulaPrefixSuffix
1Cations
   e.g. Ammonium		 
-NH4+		-onio-
ammonio-		-onium
-ammonium
2Carboxylic acids
   Thiocarboxylic acids
   Selenocarboxylic acids
   Sulfonic acids
   Sulfinic acids
   Sulfenic acids		-COOH
-COSH
-COSeH
-SO3H
-SO2H
-SOH		carboxy-
thiocarboxy-
selenocarboxy-
sulfo-
sulfino-
sulfeno-		-oic acid*
-thioic acid*
-selenoic acid*
-sulfonic acid
-sulfinic acid
-sulfenic acid
3Carboxylic acid derivatives
   Esters
   Acyl chlorides
   Amides
   Imides
   Amidines		 
-COOR
-COCl
-CONH2
-CON=C<
-C(=NH)NH2		 
R-oxycarbonyl-
chloroformyl-
carbamoyl-
-imido-
amidino-		 
 
-oyl chloride*
-amide*
-imide*
-amidine*
4Nitriles
   Isonitriles		-CN
-NC		cyano-
isocyano-		-nitrile*
-isonitrile
5Aldehydes
   Thioaldehydes		-CHO
-CHS		formyl-
thioformyl-		-al*
-thial*
6Ketones
   Thioketones		>CO
>CS		oxo-
thiono-		-one
-thione
7Alcohols
   Thiols
   Selenols
   Tellurols		-OH
-SH
-SeH
-TeH		hydroxy-
mercapto-
selanyl-
tellanyl-		-ol
-thiol
-selenol
-tellurol
8Hydroperoxides-OOHhydroperoxy--hydroperoxide
9Amines
   Imines
   Hydrazines		-NH2
=NH
-NHNH2		amino-
imino-
hydrazino-		-amine
-imine
-hydrazine
10Ethers
   Thioethers
   Selenoethers		-O-
-S-
-Se-		-oxy-
-thio-
-seleno-		 
11Peroxides
   Disulfides		-OO-
-SS-		-peroxy-
-disulfanyl-		 

*Note: These suffixes, in which the carbon atom is counted as part of the preceding chain, are the most commonly used. See individual functional group articles for more details.

Common nomenclature

Common nomenclature is an older system of naming organic compounds.

Ketones

Common names for ketones can be derived by naming the two Alkyl or Aryl groups bonded to the carbonyl group as separate words followed by the word ketone.

The first three of the names shown above are still considered to be acceptable IUPAC names.

Aldehydes

The common name for an Aldehyde is derived from the common name of the corresponding Carboxylic acid by dropping the word acid and changing the suffix from -ic or -oic to -aldehyde.

Ions

The IUPAC nomenclature also provides rules for naming ions.

Hydron

Hydron is a generic term for hydrogen cation; protons, deuterons and tritons are all hydrons.

Parent hydride cations

Simple cations formed by adding a hydron to a hydride of a halogen, Chalcogen or nitrogen-family element are named by adding the suffix "-onium" to the element's root: H4N+ is ammonium, H3O+ is oxonium, and H2F+ is fluoronium. Ammonium was adopted instead of nitronium, which commonly refers to NO2+.

If the cationic center of the hydride is not a halogen, chalcogen or nitrogen-family element then the suffix "-ium" is added to the name of the neutral hydride after dropping any final 'e'. H5C+ is methanium, HO-O+H2 is dioxidanium (HO-OH is dioxidane), and H2N-N+H3 is diazanium (H2N-NH2 is diazane).

Cations and substitution

The above cations except for methanium are not, strictly speaking, organic, since they do not contain carbon. However, many organic cations are obtained by substituting another element or some functional group for a hydrogen.

The name of each substitution is prepended to the hydride cation name. If many substitutions by the same functional group occur, then the number is indicated by prepending "di-", "tri-" as with halogenation. (CH3)3O+ is trimethyloxonium. CH3F3N+ is trifluoromethylammonium.

References

  1.   Nomenclature of Organic Chemistry, Oxford:Pergamon Press, 1979; A Guide to IUPAC Nomenclature of Organic Compounds, Recommendations 1993, Oxford:Blackwell Scientific Publications, 1993.

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